Epigenomics

Front Cover
Anne C. Ferguson-Smith, John M. Greally, Ph.D., Rob A. Martienssen
Springer Science & Business Media, Dec 5, 2008 - Medical - 438 pages

Epigenetic modifications act on DNA and its packaging proteins, the histones, to regulate genome function. Manifest as the heritable methylation of DNA and as post-translational histone modifications, these molecular flags influence the architecture and integrity of the chromosome, the accessibility of DNA to gene regulatory components and the ability of chromatin to interact within nuclear complexes. While a multicellular individual has only one genome, it has multiple epigenomes reflecting the diversity of cell types and their properties at different times of life; in health and in disease. Relationships are emerging between the underlying DNA sequence and dynamic epigenetic states and their consequences,such as the role of RNA interference and non-coding RNA. These integrated approaches go hand-in-hand with studies describing the genomic locations of epigenetic modifications in different cell types at different times.

The excitement and curiosity surrounding epigenomics is driven by a growing community of researchers in a burgeoning field and the development of new technologies built on the backbone of genome sequencing projects. Research has shown that the adaptability and vulnerability of epigenetic states has profound effects on natural variation, the response of the genome to its environment and on health and disease.

The aim of this volume is not to describe epigenomes, but rather to explore how understanding epigenomes tells us more about how biological systems work and the challenges and approaches taken to accomplish this. These contributions have attempted to integrate epigenomics into our understanding of genomes in wider context, and to communicate some of the wonders of epigenetics illustrated through examples across the biological spectrum.

 

Contents

Strategies for Epigenome Analysis
3
Sequencing the Epigenome
19
Integrating Epigenomic Results 37
36
Visualising the Epigenome
55
The Expanding View of Cytosine Methylation 69
68
Structural and Biochemical Advances in Mammalian DNA Methylation
85
Epigenetic Profiling of Histone Variants
101
Epigenetic Phenomena and Epigenomics in Maize
119
Genomic Imprinting A Model for Roles of Histone Modifications
234
The Epigenomic Landscape of Reprogramming in Mammals
259
Epigenetic Gene RegulationLessons from Globin
283
Meiotic Silencing Infertility and X Chromosome Evolution
301
The Neurospora Paradigm 321
320
Integrating the Genome and Epigenome in Human Disease
343
A Changing Epigenome in Health and Disease
369
Cancer Epigenomics
385

Epigenetic Silencing of Pericentromeric Heterochromatin by
148
Describing Epigenomic Information in Arabidopsis
163
Role of Small RNAs in Establishing Chromosomal Architecture
177
Polycomb Complexes and the Role of Epigenetic Memory in Development
217
Epigenetic Modulation by Environmental Factors 397
396
The Relevance of Epigenetics to Major Psychosis
411
Index
435
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